Gene RearrangementAnalySiS http://cancerit.github.io/grass/
https://github.com/PapenfussLab/gridss
Detect gene fusion directly from raw fastq files
https://github.com/OpenGene/FusionDirect.jl
Prioritize structural variants based on CADD scores
https://github.com/lganel/SVScore
GeneRearrangement AnalySiS http://cancerit.github.io/grass/
https://github.com/cancerit/grass
Breakpoints via assembly - Identifies breaks andattempts to assemble rearrangements.
https://github.com/cancerit/BRASS
FACTERA is atool for practical and robust de novo enumeration of genomic fusions andbreakpoints from paired-end targeted (or genome-wide) sequencing data. FACTERAhas minimal external dependencies, works directly on a preexisting BAMalignment file, and produces easily interpretable output.
https://factera.stanford.edu/
A method to identify structural variation from sequencing data in target regions
https://github.com/ccgd-profile/BreaKmer
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