我一直试图让Pygraphviz在Mac上使用Python3,但我无法解决TypeError问题。
具体来说,以下代码的输出(Python3 3/Eclipse/MacOS10.10.5,改编自这里教程)
import networkx as nx
import queueing_tool as qt
import pygraphviz as pgv
a = pgv.AGraph()
print(a._get_prog('fdp'))
g = qt.generate_random_graph(200, seed=3)
q = qt.QueueNetwork(g, seed=3)
q.max_agents = 20000
q.initialize(100)
q.simulate(10000)
pos = nx.nx_agraph.graphviz_layout(g.to_undirected(), prog='neato')
是以下错误:
/usr/local/bin/fdp //<-- this shows that Eclipse finds 'fdp' after adding /usr/local/bin to $PATH, ERROR in the following:
Traceback (most recent call last):
File "/Users/flurin/Documents/workspace/pedQN/main.py", line 14, in <module>
pos = nx.nx_agraph.graphviz_layout(g.to_undirected(), prog='neato')
File "/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/networkx/drawing/nx_agraph.py", line 228, in graphviz_layout
return pygraphviz_layout(G,prog=prog,root=root,args=args)
File "/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/networkx/drawing/nx_agraph.py", line 262, in pygraphviz_layout
A.layout(prog=prog,args=args)
File "/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/pygraphviz/agraph.py", line 1358, in layout
data = self._run_prog(prog, ' '.join([args, "-T", fmt]))
File "/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/pygraphviz/agraph.py", line 1338, in _run_prog
warnings.warn(b"".join(errors), RuntimeWarning)
TypeError: cannot use a string pattern on a bytes-like object
如果我使用Python2.7.x运行相同的代码(只需要将“print(Arg)”更改为“print(Arg)”为“print”),则会得到以下输出(大量警告,但效果很好):
/usr/local/bin/fdp
/usr/local/lib/python2.7/site-packages/pygraphviz/agraph.py:1338: RuntimeWarning: Warning: node 0, position [ 5.50797903 7.08147823], expected two floats
Warning: node 12, position [ 5.44649018 7.80314765], expected two floats
[... here other warnings of the same kind]
Warning: Overlap value "prism" unsupported - ignored
warnings.warn(b"".join(errors), RuntimeWarning)
所以我的问题是,我怎样才能让pygraphviz和Python3一起工作呢?我不知道该去哪儿找。请注意,在从终端或Eclipse运行上述代码时,所得到的错误没有任何不同。
是否与Python3不兼容?我记得几年前有人告诉我,为了“科学目的”,使用Python2.x可能仍然更好。现在还是这样吗?
谢谢你提前提供帮助!
发布于 2016-10-27 14:34:04
Python3中显示的字节/字符串处理来自图fix的错误中存在一个错误。修复已经包括在pygraphviz主分支中(https://github.com/pygraphviz/pygraphviz/pull/104)。您可以从https://github.com/pygraphviz/pygraphviz下载它,直到我们发布一个新版本为止。
n.b.pygraphviz在Python3中正确地工作。
https://stackoverflow.com/questions/40279361
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