我尝试用R4.1.3和gcc 11.2.0在我的书“affxparser M1 MacOS 12.3.1”中构建一个R包。
但是,该建筑物运行错误。(由于字符的限制,我没有放几行开始,要查看更多细节,可以单击这里
g++-11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Ifusion/calvin_files/array/src -Ifusion/calvin_files/data/src -Ifusion/calvin_files/exception/src -Ifusion/calvin_files/fusion/src -Ifusion/calvin_files/fusion/src/GCOSAdapter -Ifusion/calvin_files/fusion/src/CalvinAdapter -Ifusion/calvin_files/parameter/src -Ifusion/calvin_files/parsers/src -Ifusion/calvin_files/portability/src -Ifusion/calvin_files/template/src -Ifusion/calvin_files/utils/src -Ifusion/calvin_files/writers/src -Ifusion/file -Ifusion/file/TsvFile -Ifusion/portability -Ifusion/util -Ifusion -D_USE_MEM_MAPPING_ -I/opt/R/arm64/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -Wno-sign-compare -O0 -c fusion/calvin_files/fusion/src/FusionCELData.cpp -o fusion/calvin_files/fusion/src/FusionCELData.o
In file included from fusion/file/CELFileData.h:33,
from fusion/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:30,
from fusion/calvin_files/fusion/src/FusionCELData.cpp:24:
fusion/file/FileIO.h: In function 'uint16_t affy_swap16(uint16_t)':
fusion/file/FileIO.h:67:31: warning: conversion from 'int' to 'uint16_t' {aka 'short unsigned int'} may change value [-Wconversion]
67 | return ((((x) >> 8) & 0xff) | (((x) & 0xff) << 8));
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from fusion/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:30,
from fusion/calvin_files/fusion/src/FusionCELData.cpp:24:
fusion/file/CELFileData.h: At global scope:
fusion/file/CELFileData.h:91:23: warning: malformed '#pragma options align={mac68k|power|reset}', ignoring [-Wpragmas]
91 | #pragma options align=packed
| ^~~~~~
fusion/file/CELFileData.h:127:23: error: too many '#pragma options align=reset'
127 | #pragma options align=reset
| ^~~~~
fusion/calvin_files/fusion/src/FusionCELData.cpp: In member function 'unsigned int affymetrix_fusion_io::FusionCELData::GetFileSize()':
fusion/calvin_files/fusion/src/FusionCELData.cpp:492:22: warning: conversion from 'int64_t' {aka 'long long int'} to 'unsigned int' may change value [-Wconversion]
492 | return Fs::fileSize(filename);
| ~~~~~~~~~~~~^~~~~~~~~~
make: *** [fusion/calvin_files/fusion/src/FusionCELData.o] Error 1
ERROR: compilation failed for package ‘affxparser’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/affxparser’此外,我还安装了一些其他软件包,它们也运行错误。根据一些信息,我在命令行中用bash_profile和Makevars编写了一些代码。我在下面的bash_profile中添加代码
alias gcc='gcc-11'
alias cc='gcc-11'
alias g++='g++-11'
alias c++='c++-11'我创建了一个Makevars
VER=-11
CC=gcc$(VER)
CXX=g++$(VER)
CFLAGS=-mtune=native -g -O2 -Wall -pedantic -Wconversion
CXXFLAGS=-mtune=native -g -O2 -Wall -pedantic -Wconversion
FLIBS=-L/usr/local/Cellar/gcc/11.2.0/lib/gcc/11我认为make: ***[fusion/calvin_files/fusion/src/FusionCELData.o] Error 1可能是问题所在,但我不知道如何解决它。希望有人能回答。
发布于 2022-04-19 04:22:32
我在上面显示的Makevars和bash_profile中隐藏了这些代码,从而解决了这个问题,这使得我的分析器变成了affxparser中配置文件代码的默认clang。最后,完成这个。
https://stackoverflow.com/questions/71894267
复制相似问题