下面是报错内容:
Channels:
- defaults
Platform: linux-64
Collecting package metadata (repodata.json): failed
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda/exception_handler.py", line 17, in __call__
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda/cli/main.py", line 83, in main_subshell
exit_code = do_call(args, parser)
^^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda/cli/conda_argparse.py", line 196, in do_call
result = getattr(module, func_name)(args, parser)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda/notices/core.py", line 124, in wrapper
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda/cli/main_create.py", line 125, in execute
return install(args, parser, "create")
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda/cli/install.py", line 360, in install
unlink_link_transaction = solver.solve_for_transaction(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda/core/solve.py", line 148, in solve_for_transaction
unlink_precs, link_precs = self.solve_for_diff(
^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda/core/solve.py", line 217, in solve_for_diff
final_precs = self.solve_final_state(
^^^^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda_libmamba_solver/solver.py", line 207, in solve_final_state
index = IndexHelper(
^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda_libmamba_solver/index.py", line 136, in __init__
self._index = self._load_channels()
^^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda_libmamba_solver/index.py", line 332, in _load_channels
jsons = {url: str(path) for (url, path) in executor.map(self._fetch_channel, urls)}
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda_libmamba_solver/index.py", line 332, in <dictcomp>
jsons = {url: str(path) for (url, path) in executor.map(self._fetch_channel, urls)}
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/concurrent/futures/_base.py", line 619, in result_iterator
yield _result_or_cancel(fs.pop())
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/concurrent/futures/_base.py", line 317, in _result_or_cancel
return fut.result(timeout)
^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/concurrent/futures/_base.py", line 456, in result
return self.__get_result()
^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/concurrent/futures/_base.py", line 401, in __get_result
raise self._exception
File "/home/chens/anaconda3/lib/python3.11/concurrent/futures/thread.py", line 58, in run
result = self.fn(*self.args, **self.kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda_libmamba_solver/index.py", line 254, in _fetch_channel
json_path, _ = subdir_data.repo_fetch.fetch_latest_path()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda/gateways/repodata/__init__.py", line 734, in fetch_latest_path
_, state = self.fetch_latest()
^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda/gateways/repodata/__init__.py", line 774, in fetch_latest
cache.load_state()
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda/gateways/repodata/__init__.py", line 577, in load_state
self.load(state_only=True)
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda/gateways/repodata/__init__.py", line 524, in load
with self.lock("r+") as state_file:
File "/home/chens/anaconda3/lib/python3.11/contextlib.py", line 137, in __enter__
return next(self.gen)
^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/site-packages/conda/gateways/repodata/__init__.py", line 643, in lock
with self.cache_path_state.open(mode) as state_file, lock(state_file):
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/chens/anaconda3/lib/python3.11/pathlib.py", line 1044, in open
return io.open(self, mode, buffering, encoding, errors, newline)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
PermissionError: [Errno 13] Permission denied: '/home/chens/anaconda3/pkgs/cache/47929eba.info.json'
`$ /home/chens/anaconda3/bin/conda create -n scRNAseq`
environment variables:
CIO_TEST=<not set>
CONDA_DEFAULT_ENV=RNAseq
CONDA_EXE=/home/chens/anaconda3/bin/conda
CONDA_PREFIX=/home/chens/anaconda3/envs/RNAseq
CONDA_PREFIX_1=/home/chens/anaconda3
CONDA_PREFIX_2=/home/chens/anaconda3/envs/RNAseq
CONDA_PREFIX_3=/home/chens/anaconda3
CONDA_PROMPT_MODIFIER=(RNAseq)
CONDA_PYTHON_EXE=/home/chens/anaconda3/bin/python
CONDA_ROOT=/home/chens/anaconda3
CONDA_SHLVL=4
CURL_CA_BUNDLE=<not set>
LD_PRELOAD=<not set>
PATH=/home/chens/anaconda3/envs/RNAseq/bin:/home/chens/anaconda3/bin:/home/
chens/anaconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr
/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/lib/wsl/lib:/mnt/c/Pr
ogram Files (x86)/Intel/Intel(R) Management Engine
Components/iCLS:/mnt/c/Program Files/Intel/Intel(R) Management Engine
Components/iCLS:/mnt/c/Windows/system32:/mnt/c/Windows:/mnt/c/Windows/
System32/Wbem:/mnt/c/Windows/System32/WindowsPowerShell/v1.0:/mnt/c/Wi
ndows/System32/OpenSSH:/mnt/c/Program Files (x86)/Intel/Intel(R)
Management Engine Components/DAL:/mnt/c/Program Files/Intel/Intel(R)
Management Engine Components/DAL:/mnt/c/Program Files
(x86)/Intel/Intel(R) Management Engine Components/IPT:/mnt/c/Program
Files/Intel/Intel(R) Management Engine Components/IPT:/mnt/c/Program
Files (x86)/NVIDIA Corporation/PhysX/Common:/mnt/c/WINDOWS/system32:/m
nt/c/WINDOWS:/mnt/c/WINDOWS/System32/Wbem:/mnt/c/WINDOWS/System32/Wind
owsPowerShell/v1.0:/mnt/c/WINDOWS/System32/OpenSSH:/mnt/d/Program
Files/R/R-4.1.0/bin:/mnt/d/Program Files/R/R-4.3.1/bin:/mnt/d/Program
Files/R/R-4.3.2/bin:/mnt/d/Program Files/Python3.10:/mnt/c/Program
Files (x86)/NetSarang/Xftp 7:/mnt/c/Program Files
(x86)/NetSarang/Xshell 7:/mnt/c/Program Files/Git/cmd:/mnt/c/Users/che
ns/AppData/Local/Microsoft/WindowsApps:/mnt/c/Users/chens/AppData/Loca
l/Programs/Microsoft VS Code/bin:/snap/bin:/home/chens/anaconda3/bin
REQUESTS_CA_BUNDLE=<not set>
SSL_CERT_FILE=<not set>
active environment : RNAseq
active env location : /home/chens/anaconda3/envs/RNAseq
shell level : 4
user config file : /home/chens/.condarc
populated config files : /home/chens/.condarc
conda version : 24.1.2
conda-build version : 24.1.2
python version : 3.11.7.final.0
solver : libmamba (default)
virtual packages : __archspec=1=skylake
__conda=24.1.2=0
__cuda=12.2=0
__glibc=2.35=0
__linux=5.15.146.1=0
__unix=0=0
base environment : /home/chens/anaconda3 (writable)
conda av data dir : /home/chens/anaconda3/etc/conda
conda av metadata url : None
channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /home/chens/anaconda3/pkgs
/home/chens/.conda/pkgs
envs directories : /home/chens/anaconda3/envs
/home/chens/.conda/envs
platform : linux-64
user-agent : conda/24.1.2 requests/2.31.0 CPython/3.11.7 Linux/5.15.146.1-microsoft-standard-WSL2 ubuntu/22.04.3 glibc/2.35 solver/libmamba conda-libmamba-solver/24.1.0 libmambapy/1.5.6 aau/0.4.3 c/FPAgCaewAd7CYVcASjwk9Q s/Npd8DmKiYjuMLZWfYsa-1A e/eenBp6LtjzPEPtRfMtfbqg
UID:GID : 1000:1000
netrc file : None
offline mode : False
An unexpected error has occurred. Conda has prepared the above report.
If you suspect this error is being caused by a malfunctioning plugin,
consider using the --no-plugins option to turn off plugins.
Example: conda --no-plugins install <package>
Alternatively, you can set the CONDA_NO_PLUGINS environment variable on
the command line to run the command without plugins enabled.
Example: CONDA_NO_PLUGINS=true conda install <package>
Upload did not complete.
解决办法:
清除conda缓存:有时候,conda的缓存文件可能会损坏。运行以下命令来清除缓存:
conda clean --all
重新创建环境
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